Contents
- Example: Mapping images to an atlas and visualizing them with a river plot
- View the atlas to see what it looks like
- Create a river plot for the overall relationship, and plot the matrix
- Visualize the matrix and identify the top network for each region
- Create a river plot and slice montage for each network
Example: Mapping images to an atlas and visualizing them with a river plot
Often, we would like to map a results image (e.g., t-map or functional connectivity map) to an atlas to help localize where the activity is. The table() method is one way to do this, as it auto-labels regions using an atlas. Here, we will explore another way of doing this, using river plots.
The riverplot method creates a ribbon plot showing similarities between one set of spatial maps (e.g., here, a single results map) and another (here, the regions that comprise a standard cerebellar brain atlas).
We'll load the cerebellar atlas, load a set of functional connectivity maps from the Buckner Lab 1,000-person functional connectivity dataset, and visualize the relationships between them.
In addition to serving as an example of how to use the code, the results are informative for localizing which anatomical parts of the cerebellum are mapped to particular resting-state networks.
Tor Wager, Aug 2018
% First, we'll load the images and define some names and colors % ------------------------------------------------------------------- % Load the cerebellar atlas (requires the Neuroimaging_Pattern_Masks repository) cblm = load_atlas('cerebellum'); [fc, fc_names] = load_image_set('bucknerlab_wholebrain'); % Add labels to image_names (used in riverplot.m method) % ------------------------------------------------------------------- fc.image_names = fc_names'; cblm.image_names = cblm.labels; % Define Colors % ------------------------------------------------------------------- n = length(fc_names); fc_colors = seaborn_colors(n); % for initial montage fc_color = {[.5 0 1]}; % for riverplot cblm_colors = colorcube_colors(num_regions(cblm)); % for riverplot % Some display helper functions dashes = '----------------------------------------------'; printhdr = @(str) fprintf('%s\n%s\n%s\n', dashes, str, dashes);
Loading atlas: /Users/torwager/Documents/GitHub/MasksPrivate/Masks_private/2009_Diedrichsen_SUIT_Cerebellum-MNIsegment-MRICroN/SUIT_Cerebellum_MNI_atlas_object.mat Loaded images: /Users/torwager/Documents/GitHub/CanlabCore/CanlabCore/canlab_canonical_brains/Combined_multiatlas_ROI_masks/rBucknerlab_7clusters_SPMAnat_Other_combined.img
View the atlas to see what it looks like
------------------------------------------------------------------- montage(cblm) will also work here. This plot is a little nicer because it will show both the atlas and the networks side by side
o2 = canlab_results_fmridisplay([], 'multirow', 2); o2 = montage(cblm, o2, 'wh_montages', 1:2); title_montage(o2, 2, 'Cerebellar atlas'); title_montage(o2, 4, 'Functional Networks'); for i = 1:n myfc = get_wh_image(fc, i); o2 = addblobs(o2, region(myfc), 'wh_montages', 3:4, 'color', fc_colors{i}); end % Get regions (for slice montage) r = atlas2region(cblm);
Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little. Grouping contiguous voxels: 12 regions sagittal montage: 684 voxels displayed, 21728 not displayed on these slices axial montage: 5724 voxels displayed, 16688 not displayed on these slices Grouping contiguous voxels: 3 regions sagittal montage: 742 voxels displayed, 22876 not displayed on these slices axial montage: 3587 voxels displayed, 20031 not displayed on these slices Grouping contiguous voxels: 28 regions sagittal montage: 183 voxels displayed, 17122 not displayed on these slices axial montage: 2470 voxels displayed, 14835 not displayed on these slices Grouping contiguous voxels: 18 regions sagittal montage: 727 voxels displayed, 19210 not displayed on these slices axial montage: 4035 voxels displayed, 15902 not displayed on these slices Grouping contiguous voxels: 32 regions sagittal montage: 524 voxels displayed, 15413 not displayed on these slices axial montage: 2806 voxels displayed, 13131 not displayed on these slices Grouping contiguous voxels: 28 regions sagittal montage: 578 voxels displayed, 26869 not displayed on these slices axial montage: 5536 voxels displayed, 21911 not displayed on these slices Grouping contiguous voxels: 16 regions sagittal montage: 1758 voxels displayed, 35916 not displayed on these slices axial montage: 7915 voxels displayed, 29759 not displayed on these slices
Create a river plot for the overall relationship, and plot the matrix
The ribbon thicknesses in the riverplot are proportional to the cosine similarity between the network map and the region.
create_figure('riverplot'); [layer1, layer2, ribbons, sim_matrix] = riverplot(fc, 'layer2', cblm, 'colors1', fc_colors, 'colors2', cblm_colors); drawnow, snapnow
Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 963 387 979 942 693 979 954 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1095 396 1100 1066 780 1099 1094 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1265 498 1298 1022 1209 1313 1299 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1205 372 1252 1052 1188 1262 1263 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2250 1938 2224 1260 2293 1647 2314 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 557 549 596 352 611 448 616 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2073 1743 2070 1396 2115 1593 2032 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3417 3441 3437 3067 3439 1606 2258 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 28 28 28 28 0 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3330 3351 3337 3105 3342 2356 1324 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2861 2861 2711 2731 2824 1357 1900 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 150 166 109 149 166 90 166 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2724 2724 2586 2702 2679 1960 1015 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1659 1659 1133 1239 1643 996 1648 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 71 100 78 53 100 98 100 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1587 1588 1055 1385 1559 945 1441 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1478 1308 1191 571 1462 1398 1478 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 369 299 312 143 368 371 371 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1455 1244 1051 765 1444 1326 1455 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1249 890 1109 759 1107 1197 1245 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 232 113 232 152 199 232 232 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1187 730 1011 831 1035 1175 1169 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 957 887 869 882 735 885 570 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 250 224 250 221 168 249 138 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 960 849 851 914 717 948 543 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 195 196 127 175 155 149 179 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 108 108 108 93 108 27 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 178 178 127 176 136 148 125 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 340 337 340 248 183 276 316 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 340 332 339 300 117 316 296 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 52 61 45 25 61 61 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 48 61 50 24 61 61 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 6 6 6 0 6 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 6 6 6 0 6 6 Name Cosine Similarity Cblm I IV L 0.0256 0.1423 0.0000 0.0388 0.1167 0.0000 0.0239 Cblm I IV R 0.0144 0.1489 0.0000 0.0348 0.1214 0.0060 0.0121 Cblm V L 0.0418 0.1661 0.0273 0.0952 0.0710 0.0060 0.0180 Cblm V R 0.0442 0.1726 0.0228 0.0836 0.0596 0.0060 0.0000 Cblm VI L 0.0498 0.1103 0.0643 0.2122 0.0352 0.1355 0.0107 Cblm Vermis VI 0.0462 0.0458 0.0274 0.1016 0.0157 0.0658 0.0000 Cblm VI R 0.0575 0.1177 0.0674 0.1835 0.0508 0.1283 0.0522 Cblm CrusI L 0.0310 0.0000 0.0145 0.1208 0.0111 0.2272 0.1626 Cblm Vermis CrusI 0.0000 0.0000 0.0000 0.0000 0.0000 0.0303 0.0000 Cblm CrusI R 0.0274 0.0000 0.0271 0.0960 0.0232 0.1681 0.2099 Cblm CrusII L 0.0000 0.0000 0.0808 0.0720 0.0432 0.2097 0.1432 Cblm Vermis CrusII 0.0233 0.0000 0.0513 0.0251 0.0000 0.0443 0.0000 Cblm CrusII R 0.0000 0.0000 0.0795 0.0321 0.0472 0.1457 0.1892 Cblm VIIb L 0.0000 0.0000 0.1603 0.1288 0.0296 0.1307 0.0166 Cblm Vermis VIIb 0.0315 0.0000 0.0309 0.0428 0.0000 0.0084 0.0000 Cblm VIIb R 0.0067 0.0000 0.1613 0.0881 0.0386 0.1365 0.0573 Cblm VIIIa L 0.0000 0.0731 0.1101 0.1896 0.0295 0.0521 0.0000 Cblm Vermis VIIIa 0.0094 0.0483 0.0519 0.0947 0.0136 0.0000 0.0000 Cblm VIIIa R 0.0000 0.0824 0.1346 0.1698 0.0250 0.0619 0.0000 Cblm VIIIb L 0.0000 0.1120 0.0778 0.1345 0.0832 0.0391 0.0103 Cblm Vermis VIIIb 0.0000 0.0652 0.0000 0.0564 0.0407 0.0000 0.0000 Cblm VIIIb R 0.0000 0.1263 0.0896 0.1106 0.0813 0.0188 0.0193 Cblm IX L 0.0000 0.0491 0.0619 0.0556 0.1042 0.0480 0.0925 Cblm Vermis IX 0.0000 0.0290 0.0000 0.0322 0.0613 0.0060 0.0473 Cblm IX R 0.0000 0.0591 0.0684 0.0411 0.1076 0.0196 0.0954 Cblm X L 0.0067 0.0000 0.0542 0.0289 0.0420 0.0361 0.0193 Cblm Vermis X 0.0000 0.0000 0.0000 0.0000 0.0274 0.0000 0.0391 Cblm X R 0.0000 0.0000 0.0463 0.0099 0.0438 0.0291 0.0332 Cblm Dentate L 0.0000 0.0112 0.0000 0.0588 0.0884 0.0415 0.0221 Cblm Dentate R 0.0000 0.0177 0.0076 0.0413 0.1047 0.0250 0.0299 Cblm Interposed L 0.0000 0.0178 0.0000 0.0261 0.0407 0.0000 0.0000 Cblm Interposed R 0.0000 0.0202 0.0000 0.0214 0.0417 0.0000 0.0000 Cblm Fastigial L 0.0000 0.0000 0.0000 0.0000 0.0192 0.0000 0.0000 Cblm Fastigial R 0.0000 0.0000 0.0000 0.0000 0.0192 0.0000 0.0000
Visualize the matrix and identify the top network for each region
This is a bit crowded. Let's view the matrix:
create_figure('matrix', 1, 2); set(gcf, 'Position', [182 232 670 723]); imagesc(sim_matrix) set(gca, 'XTick', 1:n, 'XTickLabel', fc_names, ... 'YTick', 1:num_regions(cblm), 'YTickLabel', format_strings_for_legend(cblm.labels), ... 'XTickLabelRotation', 45, 'Ydir', 'reverse'); colorbar % Change the colormap to be more intuitive cm = colormap_tor([1 1 1], [1 0 0]); colormap(cm) title('Cosine similarity') subplot(1, 2, 2) sim_centered = zscore(zscore(sim_matrix)')'; sim_centered(sim_centered < 0) = 0; % threshold to show only top values imagesc(sim_centered) set(gca, 'XTick', 1:n, 'XTickLabel', fc_names, ... 'YTick', 1:num_regions(cblm), 'YTickLabel', format_strings_for_legend(cblm.labels), ... 'XTickLabelRotation', 45, 'Ydir', 'reverse'); colorbar title('Relative (double Z-scored) similarity') drawnow, snapnow % Get best region and make a table [~, wh_max] = max(sim_centered'); Anatomical_Region = format_strings_for_legend(cblm.labels'); Funct_Network = format_strings_for_legend(fc_names(wh_max))'; results_table = table(Anatomical_Region, Funct_Network); results_table = sortrows(results_table, 'Funct_Network'); disp(results_table)
Anatomical_Region Funct_Network
____________________ ________________
'Cblm CrusI R' 'Default'
'Cblm CrusII R' 'Default'
'Cblm Vermis X' 'Default'
'Cblm Fastigial L' 'Default'
'Cblm Fastigial R' 'Default'
'Cblm CrusI L' 'Frontoparietal'
'Cblm Vermis CrusI' 'Frontoparietal'
'Cblm CrusII L' 'Frontoparietal'
'Cblm I IV L' 'Limbic'
'Cblm I IV R' 'Limbic'
'Cblm IX L' 'Limbic'
'Cblm Vermis IX' 'Limbic'
'Cblm IX R' 'Limbic'
'Cblm Dentate L' 'Limbic'
'Cblm Dentate R' 'Limbic'
'Cblm Interposed L' 'Limbic'
'Cblm Interposed R' 'Limbic'
'Cblm V L' 'Somatomotor'
'Cblm V R' 'Somatomotor'
'Cblm VIIIb L' 'Somatomotor'
'Cblm Vermis VIIIb' 'Somatomotor'
'Cblm VIIIb R' 'Somatomotor'
'Cblm Vermis VI' 'Visual'
'Cblm VI R' 'Visual'
'Cblm Vermis CrusII' 'Visual'
'Cblm Vermis VIIb' 'Visual'
'Cblm VIIb L' 'dAttention'
'Cblm VIIb R' 'dAttention'
'Cblm VIIIa R' 'dAttention'
'Cblm X L' 'dAttention'
'Cblm X R' 'dAttention'
'Cblm VI L' 'vAttention'
'Cblm VIIIa L' 'vAttention'
'Cblm Vermis VIIIa' 'vAttention'
Create a river plot and slice montage for each network
The ribbon thicknesses in the riverplot are proportional to the cosine similarity between the network map and the region.
create_figure('riverplot'); % for each functional connectivity network, make a riverplot and a slice % montage showing the most similar cerebellar regions % ------------------------------------------------------------------- for i = 1:size(fc.dat, 2) % Select a functional connectivity network to plot % ------------------------------------------------------------------- myfc = get_wh_image(fc, i); % riverplot % ------------------------------------------------------------------- [layer1, layer2, ribbons, sim_matrix] = riverplot(myfc, 'layer2', cblm, 'colors1', fc_color, 'colors2', cblm_colors); % make the slice montage display % ------------------------------------------------------------------- o2 = canlab_results_fmridisplay([], 'multirow', 1, 'nofigure'); % remove some axes that we don't need wh_delete = 6:11; delete(o2.montage{2}.axis_handles(wh_delete)); o2.montage{2}.axis_handles(wh_delete) = []; % show the top regions on the slice montage % ------------------------------------------------------------------- thr = sort(sim_matrix, 'descend'); thr = thr(7); % greater than thr is top 6 regions %wh = sim_matrix > .02; wh = sim_matrix > thr; myr = r(wh); mycolors = cblm_colors(wh); for j = 1:length(myr) o2 = addblobs(o2, myr(j), 'trans', 'transvalue', .7, 'color', mycolors{j}, 'noverbose'); end drawnow, snapnow % Print summary of top regions % ------------------------------------------------------------------- printhdr(fc.image_names{i}) disp(char(myr.shorttitle)) end % network loop
Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 963 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1095 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1265 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1205 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2250 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 557 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2073 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3417 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3330 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2861 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 150 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2724 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1659 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 71 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1587 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1478 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 369 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1455 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1249 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 232 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1187 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 957 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 250 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 960 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 195 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 178 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 340 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 340 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.0256 Cblm I IV R 0.0144 Cblm V L 0.0418 Cblm V R 0.0442 Cblm VI L 0.0498 Cblm Vermis VI 0.0462 Cblm VI R 0.0575 Cblm CrusI L 0.0310 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.0274 Cblm CrusII L 0.0000 Cblm Vermis CrusII 0.0233 Cblm CrusII R 0.0000 Cblm VIIb L 0.0000 Cblm Vermis VIIb 0.0315 Cblm VIIb R 0.0067 Cblm VIIIa L 0.0000 Cblm Vermis VIIIa 0.0094 Cblm VIIIa R 0.0000 Cblm VIIIb L 0.0000 Cblm Vermis VIIIb 0.0000 Cblm VIIIb R 0.0000 Cblm IX L 0.0000 Cblm Vermis IX 0.0000 Cblm IX R 0.0000 Cblm X L 0.0067 Cblm Vermis X 0.0000 Cblm X R 0.0000 Cblm Dentate L 0.0000 Cblm Dentate R 0.0000 Cblm Interposed L 0.0000 Cblm Interposed R 0.0000 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- Visual ---------------------------------------------- Cblm_V_L Cblm_V_R Cblm_VI_L Cblm_Vermis_VI Cblm_VI_R Cblm_Vermis_VIIb Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 387 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 396 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 498 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 372 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1938 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 549 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1743 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3441 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3351 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2861 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 166 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2724 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1659 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 100 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1588 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1308 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 299 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1244 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 890 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 113 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 730 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 887 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 224 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 849 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 196 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 178 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 337 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 332 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 52 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 48 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.1423 Cblm I IV R 0.1489 Cblm V L 0.1661 Cblm V R 0.1726 Cblm VI L 0.1103 Cblm Vermis VI 0.0458 Cblm VI R 0.1177 Cblm CrusI L 0.0000 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.0000 Cblm CrusII L 0.0000 Cblm Vermis CrusII 0.0000 Cblm CrusII R 0.0000 Cblm VIIb L 0.0000 Cblm Vermis VIIb 0.0000 Cblm VIIb R 0.0000 Cblm VIIIa L 0.0731 Cblm Vermis VIIIa 0.0483 Cblm VIIIa R 0.0824 Cblm VIIIb L 0.1120 Cblm Vermis VIIIb 0.0652 Cblm VIIIb R 0.1263 Cblm IX L 0.0491 Cblm Vermis IX 0.0290 Cblm IX R 0.0591 Cblm X L 0.0000 Cblm Vermis X 0.0000 Cblm X R 0.0000 Cblm Dentate L 0.0112 Cblm Dentate R 0.0177 Cblm Interposed L 0.0178 Cblm Interposed R 0.0202 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- Somatomotor ---------------------------------------------- Cblm_I_IV_L Cblm_I_IV_R Cblm_V_L Cblm_V_R Cblm_VI_R Cblm_VIIIb_R Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 979 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1100 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1298 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1252 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2224 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 596 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2070 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3437 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3337 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2711 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 109 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2586 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1133 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 78 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1055 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1191 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 312 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1051 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1109 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 232 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1011 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 869 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 250 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 851 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 127 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 127 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 340 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 339 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.0000 Cblm I IV R 0.0000 Cblm V L 0.0273 Cblm V R 0.0228 Cblm VI L 0.0643 Cblm Vermis VI 0.0274 Cblm VI R 0.0674 Cblm CrusI L 0.0145 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.0271 Cblm CrusII L 0.0808 Cblm Vermis CrusII 0.0513 Cblm CrusII R 0.0795 Cblm VIIb L 0.1603 Cblm Vermis VIIb 0.0309 Cblm VIIb R 0.1613 Cblm VIIIa L 0.1101 Cblm Vermis VIIIa 0.0519 Cblm VIIIa R 0.1346 Cblm VIIIb L 0.0778 Cblm Vermis VIIIb 0.0000 Cblm VIIIb R 0.0896 Cblm IX L 0.0619 Cblm Vermis IX 0.0000 Cblm IX R 0.0684 Cblm X L 0.0542 Cblm Vermis X 0.0000 Cblm X R 0.0463 Cblm Dentate L 0.0000 Cblm Dentate R 0.0076 Cblm Interposed L 0.0000 Cblm Interposed R 0.0000 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- dAttention ---------------------------------------------- Cblm_CrusII_L Cblm_VIIb_L Cblm_VIIb_R Cblm_VIIIa_L Cblm_VIIIa_R Cblm_VIIIb_R Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 942 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1066 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1022 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1052 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1260 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 352 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1396 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3067 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3105 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2731 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 149 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2702 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1239 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 53 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1385 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 571 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 143 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 765 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 759 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 152 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 831 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 882 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 221 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 914 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 175 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 176 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 248 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 300 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 45 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 50 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.0388 Cblm I IV R 0.0348 Cblm V L 0.0952 Cblm V R 0.0836 Cblm VI L 0.2122 Cblm Vermis VI 0.1016 Cblm VI R 0.1835 Cblm CrusI L 0.1208 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.0960 Cblm CrusII L 0.0720 Cblm Vermis CrusII 0.0251 Cblm CrusII R 0.0321 Cblm VIIb L 0.1288 Cblm Vermis VIIb 0.0428 Cblm VIIb R 0.0881 Cblm VIIIa L 0.1896 Cblm Vermis VIIIa 0.0947 Cblm VIIIa R 0.1698 Cblm VIIIb L 0.1345 Cblm Vermis VIIIb 0.0564 Cblm VIIIb R 0.1106 Cblm IX L 0.0556 Cblm Vermis IX 0.0322 Cblm IX R 0.0411 Cblm X L 0.0289 Cblm Vermis X 0.0000 Cblm X R 0.0099 Cblm Dentate L 0.0588 Cblm Dentate R 0.0413 Cblm Interposed L 0.0261 Cblm Interposed R 0.0214 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- vAttention ---------------------------------------------- Cblm_VI_L Cblm_VI_R Cblm_VIIb_L Cblm_VIIIa_L Cblm_VIIIa_R Cblm_VIIIb_L Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 693 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 780 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1209 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1188 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2293 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 611 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2115 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3439 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 3342 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2824 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 166 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2679 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1643 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 100 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1559 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1462 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 368 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1444 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1107 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 199 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1035 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 735 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 168 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 717 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 155 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 93 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 136 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 183 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 117 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 25 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 24 Name Cosine Similarity Cblm I IV L 0.1167 Cblm I IV R 0.1214 Cblm V L 0.0710 Cblm V R 0.0596 Cblm VI L 0.0352 Cblm Vermis VI 0.0157 Cblm VI R 0.0508 Cblm CrusI L 0.0111 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.0232 Cblm CrusII L 0.0432 Cblm Vermis CrusII 0.0000 Cblm CrusII R 0.0472 Cblm VIIb L 0.0296 Cblm Vermis VIIb 0.0000 Cblm VIIb R 0.0386 Cblm VIIIa L 0.0295 Cblm Vermis VIIIa 0.0136 Cblm VIIIa R 0.0250 Cblm VIIIb L 0.0832 Cblm Vermis VIIIb 0.0407 Cblm VIIIb R 0.0813 Cblm IX L 0.1042 Cblm Vermis IX 0.0613 Cblm IX R 0.1076 Cblm X L 0.0420 Cblm Vermis X 0.0274 Cblm X R 0.0438 Cblm Dentate L 0.0884 Cblm Dentate R 0.1047 Cblm Interposed L 0.0407 Cblm Interposed R 0.0417 Cblm Fastigial L 0.0192 Cblm Fastigial R 0.0192 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- Limbic ---------------------------------------------- Cblm_I_IV_L Cblm_I_IV_R Cblm_IX_L Cblm_IX_R Cblm_Dentate_L Cblm_Dentate_R Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 979 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1099 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1313 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1262 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1647 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 448 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1593 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1606 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2356 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1357 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 90 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1960 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 996 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 98 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 945 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1398 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 371 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1326 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1197 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 232 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1175 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 885 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 249 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 948 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 149 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 108 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 148 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 276 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 316 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.0000 Cblm I IV R 0.0060 Cblm V L 0.0060 Cblm V R 0.0060 Cblm VI L 0.1355 Cblm Vermis VI 0.0658 Cblm VI R 0.1283 Cblm CrusI L 0.2272 Cblm Vermis CrusI 0.0303 Cblm CrusI R 0.1681 Cblm CrusII L 0.2097 Cblm Vermis CrusII 0.0443 Cblm CrusII R 0.1457 Cblm VIIb L 0.1307 Cblm Vermis VIIb 0.0084 Cblm VIIb R 0.1365 Cblm VIIIa L 0.0521 Cblm Vermis VIIIa 0.0000 Cblm VIIIa R 0.0619 Cblm VIIIb L 0.0391 Cblm Vermis VIIIb 0.0000 Cblm VIIIb R 0.0188 Cblm IX L 0.0480 Cblm Vermis IX 0.0060 Cblm IX R 0.0196 Cblm X L 0.0361 Cblm Vermis X 0.0000 Cblm X R 0.0291 Cblm Dentate L 0.0415 Cblm Dentate R 0.0250 Cblm Interposed L 0.0000 Cblm Interposed R 0.0000 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- Frontoparietal ---------------------------------------------- Cblm_VI_L Cblm_CrusI_L Cblm_CrusI_R Cblm_CrusII_L Cblm_CrusII_R Cblm_VIIb_R Image names entered, but fullpath attribute is empty. Getting path info. Warning: Some images have zero values in some of the 979 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 954 Warning: Some images have zero values in some of the 1100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1094 Warning: Some images have zero values in some of the 1314 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1299 Warning: Some images have zero values in some of the 1263 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1263 Warning: Some images have zero values in some of the 2319 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2314 Warning: Some images have zero values in some of the 616 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 616 Warning: Some images have zero values in some of the 2170 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2032 Warning: Some images have zero values in some of the 3441 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 2258 Warning: Some images have zero values in some of the 28 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 28 Warning: Some images have zero values in some of the 3351 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1324 Warning: Some images have zero values in some of the 2861 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1900 Warning: Some images have zero values in some of the 166 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 166 Warning: Some images have zero values in some of the 2724 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1015 Warning: Some images have zero values in some of the 1659 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1648 Warning: Some images have zero values in some of the 100 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 100 Warning: Some images have zero values in some of the 1588 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1441 Warning: Some images have zero values in some of the 1478 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1478 Warning: Some images have zero values in some of the 371 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 371 Warning: Some images have zero values in some of the 1455 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1455 Warning: Some images have zero values in some of the 1249 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1245 Warning: Some images have zero values in some of the 232 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 232 Warning: Some images have zero values in some of the 1187 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 1169 Warning: Some images have zero values in some of the 957 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 570 Warning: Some images have zero values in some of the 250 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 138 Warning: Some images have zero values in some of the 960 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 543 Warning: Some images have zero values in some of the 196 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 179 Warning: Some images have zero values in some of the 108 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 27 Warning: Some images have zero values in some of the 178 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 125 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 316 Warning: Some images have zero values in some of the 340 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 296 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 61 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 61 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Warning: Some images have zero values in some of the 6 voxels in weight mask. These will be excluded from similarity analysis image-wise. Number of zero or NaN values within weight mask, by input image: 6 Name Cosine Similarity Cblm I IV L 0.0239 Cblm I IV R 0.0121 Cblm V L 0.0180 Cblm V R 0.0000 Cblm VI L 0.0107 Cblm Vermis VI 0.0000 Cblm VI R 0.0522 Cblm CrusI L 0.1626 Cblm Vermis CrusI 0.0000 Cblm CrusI R 0.2099 Cblm CrusII L 0.1432 Cblm Vermis CrusII 0.0000 Cblm CrusII R 0.1892 Cblm VIIb L 0.0166 Cblm Vermis VIIb 0.0000 Cblm VIIb R 0.0573 Cblm VIIIa L 0.0000 Cblm Vermis VIIIa 0.0000 Cblm VIIIa R 0.0000 Cblm VIIIb L 0.0103 Cblm Vermis VIIIb 0.0000 Cblm VIIIb R 0.0193 Cblm IX L 0.0925 Cblm Vermis IX 0.0473 Cblm IX R 0.0954 Cblm X L 0.0193 Cblm Vermis X 0.0391 Cblm X R 0.0332 Cblm Dentate L 0.0221 Cblm Dentate R 0.0299 Cblm Interposed L 0.0000 Cblm Interposed R 0.0000 Cblm Fastigial L 0.0000 Cblm Fastigial R 0.0000 Setting up fmridisplay objects This takes a lot of memory, and can hang if you have too little.
---------------------------------------------- Default ---------------------------------------------- Cblm_CrusI_L Cblm_CrusI_R Cblm_CrusII_L Cblm_CrusII_R Cblm_IX_L Cblm_IX_R