CanlabCore contains all of our first and second level analysis code. Essentially anything other than preprocessing, applying our private masks, or individual research projects is contained in this repository. Built on SPM8 mostly, it should still work with SPM12, but
This is our legacy preprocessing pipeline. It uses our modified version of SPM8 mostly, (see below) but some parts are SPM12 compatible. We're working on an all-new preprocessing pipeline based on nipype and FMRIPREP right now, so you should probably not use this for anything.